Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKP--IIALDFQTYEEVETFLAKFSGETLSVKVGMELFYSNGPVIVEKIKQQNHEIFLDLKLHDIPNTVKSAMIGLAKLGVDMVNVHAAGGKKMMEAAKEGLEIGSPSGK-RPKIIAVTQLTSTSETDMQTEQLIKTSLLESVMHYSNLSKQAGLDGVVCSALEAEDIKQQNGADFLRVTPGIRLASDTADDQIRVVTPEKARLIGSSNIVVGRSITRANDPVAAYNQVLKEWNA
3LDV Chain:A ((25-252))
MNDPKVIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILE---PYGKERPLLIGVTVLTSMESADLQGIGIL-SAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQHLGREFKLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHP----EVVLEEINS
General information:
TITO was launched using:
RESULT:
Template:
3LDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84970 for 1795 contacts (-47.3/contact) +
2D Compatibility (PS) -24412 + (NN) -10144 + (LL) 640
1D Compatibility (HY) -18800 + (ID) 5300
Total energy: -142986.0 ( -79.66 by residue)
QMean score : 0.541
(partial model without unconserved sides chains):
PDB file :
Tito_3LDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LDV-query.scw
PDB file :
Tito_Scwrl_3LDV.pdb
: