Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGIYLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKVVLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGNERVEVRLTDVDHAEDAVIINKNE
1A4X Chain:A ((4-180))
---KAVILDEQAIRRALTRIAHEMIERNKGMNNCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYR-----------EPLVKGADIPVDITDQKVILVDDVLYTGRTVRAGMDALVDVGRPSSIQLAVLVDRGHRELPIRADYIGKNIPTSKSEKVMVQLDEVDQ-NDLVAIYEN-
General information:
TITO was launched using:
RESULT:
Template:
1A4X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -116057 for 1398 contacts (-83.0/contact) +
2D Compatibility (PS) -18461 + (NN) -6078 + (LL) 896
1D Compatibility (HY) -20000 + (ID) 5750
Total energy: -165450.0 ( -118.35 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_1A4X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1A4X-query.scw
PDB file :
Tito_Scwrl_1A4X.pdb
: