Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFRTMMNGKIHRATVTEANLNYVGSITIDSAILEAVDMLPNEKVQIVNNNNGARIETYIIPGEPGSGVICLNGAAARHVQVGDVVIIMSYGMFTDEEAKTHEPKIVVLDEKNHIEMILPEEKAHTTL
3PLX Chain:B ((4-97))
-------------------------ISIDEKLLQASGILEYEKVQVVNVNNGARFETYTIATQE-EGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKPKVVFVDENNTATKITNYEK-----
General information:
TITO was launched using:
RESULT:
Template:
3PLX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4438 for 560 contacts (-7.9/contact) +
2D Compatibility (PS) -10345 + (NN) -70 + (LL) 2092
1D Compatibility (HY) 1600 + (ID) 500
Total energy: -11661.0 ( -20.82 by residue)
QMean score : -0.010
(partial model without unconserved sides chains):
PDB file :
Tito_3PLX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PLX-query.scw
PDB file :
Tito_Scwrl_3PLX.pdb
: