Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDRELAEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIRADYAIHTNRNVIHGSDSPESAQREIQLFFAPDEILSYQKAVDTWI
3Q8V Chain:A ((1-147))
MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWL
General information:
TITO was launched using:
RESULT:
Template:
3Q8V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68432 for 1113 contacts (-61.5/contact) +
2D Compatibility (PS) -15566 + (NN) -2895 + (LL) 0
1D Compatibility (HY) -16800 + (ID) 4300
Total energy: -107993.0 ( -97.03 by residue)
QMean score : 0.515
(partial model without unconserved sides chains):
PDB file :
Tito_3Q8V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3Q8V-query.scw
PDB file :
Tito_Scwrl_3Q8V.pdb
: