Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKYCLVEKDTCIACGACSIHAPDVFDYDTEGLA---FNILDNNTGTKEIPEDLVEMVIDAEFACPSLSIKVSDSSFH
3PNI Chain:A ((6-66))
-----VDQDTCIGCAICASLCPDVFEMNDEGKAQPKVEVIED--------EELYNCAKEAMEACPVSAITIEEA---
General information:
TITO was launched using:
RESULT:
Template:
3PNI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43224 for 358 contacts (-120.7/contact) +
2D Compatibility (PS) -6328 + (NN) -2777 + (LL) 796
1D Compatibility (HY) -4400 + (ID) 1050
Total energy: -56983.0 ( -159.17 by residue)
QMean score : 0.408
(partial model without unconserved sides chains):
PDB file :
Tito_3PNI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PNI-query.scw
PDB file :
Tito_Scwrl_3PNI.pdb
: