Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTIAKMIDHTALKPDTTKEQILTLTKEAREYGFASVCVNPTWVKLSAEQLAGAESVVCTVIGFPLGANTPEVKAFEVKDAIQNGAKEVDMVINIGALKDKDDELVERDIRAVVDVAKGKALVKVIIETCLLTDEEKVRACEIAVKAGTDFVKTSTGFSTGGATAEDIALMRKTVGPNIGVKASGGVRTKEDVEKMIEAGATRIGASAGVAIVSGEKPAKPDNY
1J2W Chain:A ((1-212))
MDLAAHIDHTLLKPTATLEEVAKAAEEALEYGFYGLCIPPSYVAWVRARYPHAPFRLVTVVGFPLGYQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVRE-AVPQAVLKVILETGYFSPEEIARLAEAAIRGGADFLKTSTGFGPRGASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVALVA----------
General information:
TITO was launched using:
RESULT:
Template:
1J2W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -104989 for 1930 contacts (-54.4/contact) +
2D Compatibility (PS) -23896 + (NN) -13659 + (LL) 52
1D Compatibility (HY) -16000 + (ID) 4650
Total energy: -163142.0 ( -84.53 by residue)
QMean score : 0.682
(partial model without unconserved sides chains):
PDB file :
Tito_1J2W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J2W-query.scw
PDB file :
Tito_Scwrl_1J2W.pdb
: