Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VSLYMLVSTFAVAFIITVIGVPLFIPFLVKLKFGQSIRDEGPKMHEKKSGTPTMGAVVFITAMLISFLVFSFISGEVSAATWLLFIALALFGALGFLDDYIKVVQKRNLGLTSKQKFLGQVVISILFYLVYHFNDFAETLNIPFTNIEVDLGWFFVIFILFWLVGFSNAVNLTDGLDGLVSGLSVIAFSAFGVIAFYQEQMDVAIFCFAIVGGMLGFLLFNKNPAKIFMGDTGSLALGGSIAAISILVHQEWLLLLIGIIFVIETASVILQVFYFKATGGKRIFRMTPIHHHFELGGWSEWRVVLTFWGIGLVGAIISVCVVIF |
| 3NK4 Chain:C ((20-29)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLSADHHHHH-------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NK4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -421 for 25 contacts (-16.8/contact) +
2D Compatibility (PS) -927 + (NN) 648 + (LL) 27612
1D Compatibility (HY) 0 + (ID) 150
Total energy: 26762.0 ( 1070.48 by residue)
QMean score : -0.601
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