Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGDKIAVIPGTFDPITNGHLDIIERAAKIFDVLYVSVLNNSSKKPLFTIEERMEMIRQVTAHLPNVQVESASGLTVDYAATRGATAIVRGLRAVSDFEYEMQIASMNRTLNADIETFFVMTNTKYSFLSSSMVKEVAQYQGDISELVPEIVNKAVQAKFK
3F3M Chain:A ((1-160))
MEHTIAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLK-----GTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVPPYVEKALKKKFK
General information:
TITO was launched using:
RESULT:
Template:
3F3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99850 for 1201 contacts (-83.1/contact) +
2D Compatibility (PS) -16603 + (NN) -6084 + (LL) -8
1D Compatibility (HY) -19600 + (ID) 4650
Total energy: -146795.0 ( -122.23 by residue)
QMean score : 0.545
(partial model without unconserved sides chains):
PDB file :
Tito_3F3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F3M-query.scw
PDB file :
Tito_Scwrl_3F3M.pdb
: