Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDDCIFCKIVRGEIPSAKVYEDDEVYAFLDLGQVTEGHTLVIPKKHARNTFDLPDETAAELFRRVPKIARALKEA-LPIQGLNILNNNEEVAFQSVFHCHIHLIPRYSKSDDFGLKWKDNADWYTQERYQEIAELIAAKVD
3O0M Chain:A ((7-115))
---CVFCAIVSGDAPAIRIYEDENFLGILDIRPFTRGHTLVIPKTHTVDLTDTPPETVAGMAAVGQRIARAARESGLHADGNNIAINDGKAAFQTVFHIHLHVVPR-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3O0M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66775 for 727 contacts (-91.9/contact) +
2D Compatibility (PS) -11014 + (NN) -4597 + (LL) 2576
1D Compatibility (HY) -7200 + (ID) 2350
Total energy: -89360.0 ( -122.92 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3O0M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O0M-query.scw
PDB file :
Tito_Scwrl_3O0M.pdb
: