Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKNYKAYLIDLDGTMYRGAEVIPEAIIFIENLKRAGLPYLFVTNNSTKTPGQVAEHLTDMGIQAVSDDVFTTSQATVQFMMEQKREKTVYVIGERGIKQELTDNGFEITSSNPAFVVVGLDREVDYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPGNGSITSVVSVATETAPIFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINYGMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWEFN
3EPR Chain:A ((5-256))
---YKGYLIDLDGTIYKGKSRIPAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMATVDYMNDMNRGKTAYVIGEEGLKKAIADAGYVEDTKNPAYVVVGLDWNVTYDKLATATLAIQNGALFIGTNPDLNIPTERGLLPGAGSLNALLEAATRIKPVFIGKPNAIIMNKALEILNIPRNQAVMVGDNYLTDIMAGINNDIDTLLVTTGFTTVEEVPDLPIQPSYVLASLDEWTFN
General information:
TITO was launched using:
RESULT:
Template:
3EPR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160861 for 2194 contacts (-73.3/contact) +
2D Compatibility (PS) -27193 + (NN) -11023 + (LL) 160
1D Compatibility (HY) -27200 + (ID) 6400
Total energy: -232517.0 ( -105.98 by residue)
QMean score : 0.638
(partial model without unconserved sides chains):
PDB file :
Tito_3EPR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EPR-query.scw
PDB file :
Tito_Scwrl_3EPR.pdb
: