Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSFLLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQPYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKSGLKG
3V5E Chain:A ((4-193))
---IPTVIE------RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPE-----
General information:
TITO was launched using:
RESULT:
Template:
3V5E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119165 for 1382 contacts (-86.2/contact) +
2D Compatibility (PS) -19748 + (NN) -4649 + (LL) 348
1D Compatibility (HY) -23600 + (ID) 7200
Total energy: -174014.0 ( -125.91 by residue)
QMean score : 0.543
(partial model without unconserved sides chains):
PDB file :
Tito_3V5E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V5E-query.scw
PDB file :
Tito_Scwrl_3V5E.pdb
: