Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAQLFFRYGSMNSGKTIEILKVAHNYEEQNKTVAIFTSGIDDRDQVGFISSRIGLKREATPIFSDTNIFEIVVNIKPKPNCVLLDESQFLEKEHVFQLAKIVDELNIPVIAYGLKNDFRNELFEGSKYLLLYADKLEEMKTICWFCAK-KATMVLRVDDKGKPVYTGEQIMIGGNDHYYPVCRKCHANPPIK
2QPO Chain:A ((10-177))
--------GPMYSGKTTELLSFVEIYKLGKKKVAVFKP--------------------AHVIERPE---EMRKYIEEDTRGVFIDEVQFFNPS-LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAVCHRCGEYNATLTLKVAG------GEE-------EKYIAVCRDCY------
General information:
TITO was launched using:
RESULT:
Template:
2QPO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74690 for 1010 contacts (-74.0/contact) +
2D Compatibility (PS) -15272 + (NN) -6023 + (LL) 2768
1D Compatibility (HY) -10400 + (ID) 2350
Total energy: -105967.0 ( -104.92 by residue)
QMean score : 0.420
(partial model without unconserved sides chains):
PDB file :
Tito_2QPO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QPO-query.scw
PDB file :
Tito_Scwrl_2QPO.pdb
: