Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTELGRKAKSFMDNGDLVPDEVTNGIVRERLSEDDAKDGFLLDGFPRTVEQAQELENILSDLGTELDAVINIDVEKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQRDDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQEIKDVFVDVEKILASF
1ZIP Chain:A ((1-215))
MNLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMERLTGRRICRNCGATYHLIFHPPAKPGVCDKCGGELYQRADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLGGL
General information:
TITO was launched using:
RESULT:
Template:
1ZIP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62909 for 1667 contacts (-37.7/contact) +
2D Compatibility (PS) -23771 + (NN) -17328 + (LL) 0
1D Compatibility (HY) -25200 + (ID) 7300
Total energy: -136508.0 ( -81.89 by residue)
QMean score : 0.591
(partial model without unconserved sides chains):
PDB file :
Tito_1ZIP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZIP-query.scw
PDB file :
Tito_Scwrl_1ZIP.pdb
: