Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LKLIFAIVQDQDSNRLSDALTKGNFGATKLATTGGFLKAGNTTFIIGTEDERVEDALAIIKENCKAREQMMTPSASLGVTVDTYVPYPIEVQVGGATVFVMPVESFHHF
4WK3 Chain:A ((21-129))
MKMIIAIVQDQDSQELADQLVKNNFRATKLATT-------NTTFLCGVNDDRVDEILSVINQTCGN---------------------------GGATVFVMPVDAFHQF
General information:
TITO was launched using:
RESULT:
Template:
4WK3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44797 for 500 contacts (-89.6/contact) +
2D Compatibility (PS) -8394 + (NN) -4794 + (LL) 2064
1D Compatibility (HY) -10000 + (ID) 2350
Total energy: -68271.0 ( -136.54 by residue)
QMean score : 0.682
(partial model without unconserved sides chains):
PDB file :
Tito_4WK3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WK3-query.scw
PDB file :
Tito_Scwrl_4WK3.pdb
: