Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MERAFFMQQALEEAEKARDIGEVPIGAVVVLDGEIIGRAHNLRETSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPCPMCSGAILLSRIEKVYYGAKDPKAGTAGSLMNLLQDDRFNHTCEVEAGLMESESSEMLKSFF----QELRKRNKSNRS
1Z3A Chain:A ((11-158))
----YWMRHALTLAKRAWDEREVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEIK--------
General information:
TITO was launched using:
RESULT:
Template:
1Z3A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78997 for 1229 contacts (-64.3/contact) +
2D Compatibility (PS) -15627 + (NN) -6369 + (LL) 668
1D Compatibility (HY) -14800 + (ID) 3000
Total energy: -118125.0 ( -96.11 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_1Z3A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z3A-query.scw
PDB file :
Tito_Scwrl_1Z3A.pdb
: