Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNQTFIVKKEHISQYPNPLFVNKNESIWVFEEDTEYPGWIFCKVKSSGKEGWIPKQIIQISNDGKSGTVSEDYSARELNVKPGDKLESNRELNGWVWCVTEENEAGWVPRENLEV
1YP5 Chain:A ((12-56))
------------SGSPSELPLKKGDVIYITREEPS--GWSLGKLLDGSKEGWVPTAYMK--------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YP5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17985 for 235 contacts (-76.5/contact) +
2D Compatibility (PS) -5009 + (NN) -2859 + (LL) 3768
1D Compatibility (HY) -2800 + (ID) 700
Total energy: -25585.0 ( -108.87 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_1YP5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YP5-query.scw
PDB file :
Tito_Scwrl_1YP5.pdb
: