Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKVLFHHLKKYKLQATLSTLFVVVMVISQLWQPKLLQQVLDAIMKDDMDEISSIGALLIGIAAVGLIAGILNTILSAKVAQGVGADIRESSFRKIQTFSFSNIEKLSTGNLVVRQTNDITQVQNLVMLSLQSLTRIPIMFIGAFILAMFTLPELWWVIIVLVVLVVLIVVFTFGSMGKHFAIIQKLIDRVNSIAKENLAGMRVVKSFVQEDNEIGRF----TTVSDKLTRHTIIVGTLFSVMIPAFMLVSNLAIVVSIFFVGDMAADNPEVIGAIASFMNYLMQIMMAIIIGGMLMMMAS-----RALISLKRITEVLETEPDITYNENA-PEQDLEGTVEFRNVSFKYDGDDTPALEDISFKASVGEMVGIVGATGSGKSTLAQLIPRLYDPTEGEVIIGGTNLKDINKKTLRSTVSFVLQRAILFSGTIADNLRHGKKDATAEEMEHASKIAQAKEFIDKQAKLYEAPVSERGNNFSGGQKQRLSITRGVIGSPKVLILDDSTSALDAKSEKLVKEALNKELDDTTTFIIAQKISSVIQADKILVLDKGKLVGVGSHKELLKENETYREIYDTQKGKEVTA
2HYD Chain:A ((95-577))-------------------------------------------------------------------------------------DIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFA----AINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYL-----ELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN------


General information:
TITO was launched using:
RESULT:

Template: 2HYD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -229651 for 3626 contacts (-63.3/contact) +
2D Compatibility (PS) -50108 + (NN) -17294 + (LL) 10284
1D Compatibility (HY) -38400 + (ID) 8050
Total energy: -333219.0 ( -91.90 by residue)
QMean score : 0.405

(partial model without unconserved sides chains):
PDB file : Tito_2HYD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2HYD-query.scw
PDB file : Tito_Scwrl_2HYD.pdb: