Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VGNSVMEKIKGGLVVSCQALEDEPLHS--AFIMSKMALAAVQGGAVGIRANTAKDIRAIQSEIDVPIIGIYKKDYDDSDVFITPTLKEVREICETGVEIVAMDATTRKRPHNEDLKDILSAIRKEFPNTLFMADTASIEDVYYADSLGFDLIGTTLYGYTEETANKNISDDDFSHLKEVLKSTKRPVIAEGKIDSPSKARQVLTLGCYAVVVGGAVTRPQEITTRFTNEIQKIQEERGK
1YXY Chain:A ((10-233))
----LMEQLKGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPD---VALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITRPKEIAERFIEALK--------
General information:
TITO was launched using:
RESULT:
Template:
1YXY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134146 for 1866 contacts (-71.9/contact) +
2D Compatibility (PS) -23773 + (NN) -10459 + (LL) 480
1D Compatibility (HY) -19600 + (ID) 5000
Total energy: -192498.0 ( -103.16 by residue)
QMean score : 0.599
(partial model without unconserved sides chains):
PDB file :
Tito_1YXY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YXY-query.scw
PDB file :
Tito_Scwrl_1YXY.pdb
: