Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRLDKYLKVSRIIKRR--PVAKEVADKGRVKVNGVLAKSSTDLKLNDQ---VEIRF-GNKLLTVKVLEMKDSTKKEDAIKMYEIINETRIETDEQA
1NW4 Chain:A ((5-64))
----NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGS
General information:
TITO was launched using:
RESULT:
Template:
1NW4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3266 for 308 contacts (10.6/contact) +
2D Compatibility (PS) -5292 + (NN) 3570 + (LL) 408
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -4298.0 ( -13.95 by residue)
QMean score : 0.340
(partial model without unconserved sides chains):
PDB file :
Tito_1NW4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NW4-query.scw
PDB file :
Tito_Scwrl_1NW4.pdb
: