Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPHLSKEAFKKQIKNGIIVSCQALPGEPLYTESGGVMPLLALAAQEAGAVGIRANSVRDIKEIQEVTNLPIIGIIKREYPPQEPFITATMTEVDQLASLDIAVIALDCTLRERHDGLSVVEFIQKIKRKYPEQLLMADISTFEEGKNAFEAGVDFVGTTLSGYTDYSRQE--EGPDIELLNKLCQA-GIDVIAEGKIHTPKQANEINHIGVAGIVVGGAITRPKEIAERFISGLS
1Y0E Chain:A ((5-218))
--------------HGLIVSCQALPDEPLH--SSFIMSKMALAAYEGGAVGIRANTKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKE-TLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITRPKEITKRFVQVME
General information:
TITO was launched using:
RESULT:
Template:
1Y0E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -126648 for 1795 contacts (-70.6/contact) +
2D Compatibility (PS) -22896 + (NN) -11633 + (LL) 1552
1D Compatibility (HY) -18800 + (ID) 5250
Total energy: -183675.0 ( -102.33 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_1Y0E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y0E-query.scw
PDB file :
Tito_Scwrl_1Y0E.pdb
: