Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKKTFSAYNFLTALILCLLTVLFIFPFYWIMTGAFKSQPDTIIIPPQWWPKAPTLENFKALTVQNPALRWLWNSVFISIMTMFLVCCTSSMAGYVLAKKRFYGQKIL------FSLFIAAMALPKQVVLVP-LVRIINFMGIHDTLWAVILPLVGWPFGVFLMKQFSENIPTELLESAKIDGCGEIRTFINVAFPIVKPGFAALAIFTFINTWNDYFMQLVMLTSRNNLTISLGVATMQAEMATNYGLIMAGAALAAVPIVTVFLVFQKSFTQGITMGAVKG
3PV0 Chain:G ((80-283))
------------------------------------------------------------------PVLLWLWNSVKVAGISAIGIVALSTTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHGGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITIVFLLAQR-------------
General information:
TITO was launched using:
RESULT:
Template:
3PV0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -166537 for 1409 contacts (-118.2/contact) +
2D Compatibility (PS) -20094 + (NN) -2909 + (LL) 6236
1D Compatibility (HY) -17200 + (ID) 2850
Total energy: -203354.0 ( -144.33 by residue)
QMean score : 0.290
(partial model without unconserved sides chains):
PDB file :
Tito_3PV0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PV0-query.scw
PDB file :
Tito_Scwrl_3PV0.pdb
: