Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MILDYNKLKQETKAIVVDIIERSALKKGQIFVLGLSSSEVSGGLIGKNSSSEIGEIIVEVILKELHSR--GIYLAVQGCEHVNRALVVEAELAERQQLEVVNVVPNLHA--------GGSGQVAAFKLMTSPVEVEEIVAHAGIDIGDTSIGMHIKRVQVPLIPISRELGGAHVTALASRPKLIGGARAGYTSDPIRKF |
3KD9 Chain:A ((186-305)) | ----------------------------------------------RSFDKEVTDILEEKLKKHVNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVEN----VYAAGDVAETRHVITGRRVWVPLAPAGNKMGYVAGSNIAGKELHFPGVLGTAVTKFMDVE |
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General information:
TITO was launched using:
| RESULT:
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Template: 3KD9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10929 for 566 contacts (-19.3/contact) +
2D Compatibility (PS) -11076 + (NN) 4703 + (LL) 4164
1D Compatibility (HY) -2000 + (ID) 1350
Total energy: -16488.0 ( -29.13 by residue)
QMean score : 0.118
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