Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKNMMKYISELTTLIALAGLMVIITLINPNFLTTNNLLNLLLQVTANGFIAFGMTFVILTGGIDLSVGSILALSSALTAGLIGHGVPVGIAIVLSVALGGILGMLNGLFISYGKLAPFIVTLATMTIFRGATL----------VYSNGNPITAGLSDSFLFQF----LGQGYIVGIPFPVILMFLTFIILYILLHKTAFGKSVYALGGNEKAAYISGIKLNKVKIIIYTISGIMASISGLIITSRLSSAQPTAGASYEMDAIAAVVLGGTSLSGGKGRIIGTLIGALIIGVLNNGLNIIGVSAFWQQVVKGIVILMAVLLDRFKVAK |
3A9U Chain:A ((235-345)) | ---------------------------------------------------------------------IYALNSIMLCGLRV-GAP--ILIMPKFEIGSLLGLIEKYKVSIAPVVPPVM----MSIAKSPDLDKHDLSSLRMIKS-------ELEDTVRAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEK |
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General information:
TITO was launched using:
| RESULT:
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Template: 3A9U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -82715 for 514 contacts (-160.9/contact) +
2D Compatibility (PS) -9257 + (NN) 2031 + (LL) 6216
1D Compatibility (HY) -9200 + (ID) 1600
Total energy: -94525.0 ( -183.90 by residue)
QMean score : 0.003
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