Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNCIFCKIISGEIPSSKVYEDDEVLAFLDITQTTTGHTLLIPKKHVRNVLEMDEKTAQITFERLPKVARAVQAATKAKGMNIINNNEEIAGQTVFHAHVHLVPRFDESDGIKIHYTTHEPDFEALAKLAKEIRKEIQL
3KSV Chain:A ((12-146))
--NCIFCKIIKGDIPCAKVAETSKALAFMDINPLSRGHMLVIPKEHASCLHELGMEDAADVGVLLAKASRAVAGPDGSMQYNVLQNNGSLAHQEVPHVHFHIIPKTDEKTGLKIGWDTVKVASDELAEDAKRYSEAIAK
General information:
TITO was launched using:
RESULT:
Template:
3KSV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50745 for 861 contacts (-58.9/contact) +
2D Compatibility (PS) -14345 + (NN) -4309 + (LL) 132
1D Compatibility (HY) -8800 + (ID) 2700
Total energy: -80767.0 ( -93.81 by residue)
QMean score : 0.449
(partial model without unconserved sides chains):
PDB file :
Tito_3KSV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KSV-query.scw
PDB file :
Tito_Scwrl_3KSV.pdb
: