Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKRIKPNKKRELLKAKGINWKDVRLSQTLQEVASPKKKAPEAPKAV-DLLEGLTANKQDV------LKEAGLVSLEAFAKVSEADVLALKGIGPAAIKQLVDNGVVFAK
3M4U Chain:A ((82-155))
-------------------NLIDLDLPHTFVACQAP------VPQGVPDFLETLSEKKVDLVVMLTKLREGGVLKAERYWPEEEEDSLSFPESGHDAIKVTRDSYEVDAE
General information:
TITO was launched using:
RESULT:
Template:
3M4U.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5669 for 300 contacts (-18.9/contact) +
2D Compatibility (PS) -6810 + (NN) -50 + (LL) 1852
1D Compatibility (HY) -5200 + (ID) 1200
Total energy: -17077.0 ( -56.92 by residue)
QMean score : 0.192
(partial model without unconserved sides chains):
PDB file :
Tito_3M4U.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M4U-query.scw
PDB file :
Tito_Scwrl_3M4U.pdb
: