Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLRKYKQRNYNVAHTKQRFSIKKFKFGVASVLIGLTFLGMSSHSVLADESSIMSTEVPQTAGVKPEVTVTQPTSDVTSLATDTSTSAVLSTDASHSNPTESAEHAVGLEC
3BDM Chain:C ((201-227))
-------------------------------------------------------EVVQTGAKNIEITVVKPDSDIVALSSEEINQYVTQIEQEKQEQ------------
General information:
TITO was launched using:
RESULT:
Template:
3BDM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 1241 for 90 contacts (13.8/contact) +
2D Compatibility (PS) -3004 + (NN) -2854 + (LL) 4948
1D Compatibility (HY) -1600 + (ID) 550
Total energy: -1819.0 ( -20.21 by residue)
QMean score : 0.466
(partial model without unconserved sides chains):
PDB file :
Tito_3BDM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3BDM-query.scw
PDB file :
Tito_Scwrl_3BDM.pdb
: