Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRLVKIVTIIRNNKIRTLIFVMGSLILLFPIVSQVSYYLASHQNINQFKREVAKIDTNTVERRIALANAYNETLS---RNPLLIDPFTSKQKEGLREYARMLEVHEQIGHVAIPSIGVDIPIYAGTSETVLQKGSGHLEGTSLPVGGLSTHSVLTAHRGLPTARLFTDLNKVKKGQIFYVTNIKETLAYKVVSIKVVDPTALSEVKIVNGKDYITLLTCTPYMINSHRLLVKGERIPYDSTEAEKHKEQTVQDYRLSLVLKILLVLLIGLFIVIMMRRWMQHRQ
3RBI Chain:A ((16-214))
---------------------------------------------NINAFKEAVTKIDRVEINRRLELAYAYNASIAGAK-YPALKDPY-------VVEYARMLEVKEQIGHVIIPRINQDIPIYAGSAEENLQRGVGHLEGTSLPVGGESTHAVLTAHRGLPTAKLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHVTLLTCTPYMINSHRLLVRGKRIPYVEK-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3RBI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107738 for 1476 contacts (-73.0/contact) +
2D Compatibility (PS) -19524 + (NN) -4202 + (LL) 10188
1D Compatibility (HY) -20800 + (ID) 5800
Total energy: -147876.0 ( -100.19 by residue)
QMean score : 0.533
(partial model without unconserved sides chains):
PDB file :
Tito_3RBI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RBI-query.scw
PDB file :
Tito_Scwrl_3RBI.pdb
: