Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLILKNRLKELRARDGINQTELAKLTGVSRQTISLIERGEYTPSVIIAMKVSQVFKESLENVFSLVSTEE
2LYK Chain:A ((4-61))
------NNLKLIREKKKISQSELAALLEVSRQTINGIEKNKYNPSLQLALKIAYYLNTPLEDIFQWQPE--
General information:
TITO was launched using:
RESULT:
Template:
2LYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16931 for 427 contacts (-39.7/contact) +
2D Compatibility (PS) -6564 + (NN) -3379 + (LL) 804
1D Compatibility (HY) -6400 + (ID) 1300
Total energy: -33770.0 ( -79.09 by residue)
QMean score : 0.726
(partial model without unconserved sides chains):
PDB file :
Tito_2LYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LYK-query.scw
PDB file :
Tito_Scwrl_2LYK.pdb
: