Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLYKKRRFFMSKNNNTTCLIETAIFAALAMALSMIPDFA-SWFTPSFGAIPLILFALRRGTKYGLFAGLIWGLLHFVLSKVYYLSLSQVFIEYILAFISMGLAGVFSAKFKDALSSSSKTKALSLA--LSGAILATFVRYVWHYIAGVIFWASYAPKGMSATLYSLSVNGTAGLLTLFFVVISIIILVISYPSFFLPKK
4MHW Chain:A ((17-188))
--------------NVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILLLSLRRGLTAGLVGGLIWGILSMITGHAYILSLSQAFLEYLVAPVSLGIAGLF----------RQKTAPLKLAPVLLGTFVAVLLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISGILTAIAAFVILIIFVKKFPKLFIHSN
General information:
TITO was launched using:
RESULT:
Template:
4MHW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188497 for 1330 contacts (-141.7/contact) +
2D Compatibility (PS) -17424 + (NN) -6439 + (LL) 1716
1D Compatibility (HY) -25600 + (ID) 3850
Total energy: -240094.0 ( -180.52 by residue)
QMean score : 0.290
(partial model without unconserved sides chains):
PDB file :
Tito_4MHW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MHW-query.scw
PDB file :
Tito_Scwrl_4MHW.pdb
: