Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKKTQALIEQYSKSLVEVAIEHKIVEKIQQEVAALIDIFETSELEGVLSSLAVSHDEKQHFVKTLQTSCSTYLVNFLEVIVQNEREALLYPILKSVDQELIKVNGQYPIQITTAVALSPEQKERLFDIAKTKLALPNGQLVEHIDPSIVGGFVVNANNKVIDASVRNQLHQFKMKLK
1ABV Chain:A ((10-105))
-----------YAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEAT-----------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1ABV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -63310 for 700 contacts (-90.4/contact) +
2D Compatibility (PS) -9925 + (NN) -2632 + (LL) 6552
1D Compatibility (HY) -2800 + (ID) 900
Total energy: -73015.0 ( -104.31 by residue)
QMean score : 0.707
(partial model without unconserved sides chains):
PDB file :
Tito_1ABV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ABV-query.scw
PDB file :
Tito_Scwrl_1ABV.pdb
: