Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTGASYPKYRFSVGKYTYGYQQFFYEGVNLKEIGAFCSIAQNVTI--TGMNHPTDHITTNPFIYYKSRGFINEDRADLIDEKKNGKVIIGNDVWIGTNVTILPSVTIGNGAIIGAGSVITKDIPDYAVVAGTPAKIIKYRFSEEEITLLNASQWWNWSDEAIKEHISEFSDKKEFFNTLKSISENKNHKL
1KK6 Chain:A ((62-198))
--------------------------------KIGKFCSIGPGVTIIMNGANHRMDG-STYPFNLFGNGWEKHMPKLDQLPIK--GDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVKDIAPYMLAGGNPANEIKQRFDQDTINQLLDIKWWNWPIDIINENIDKILDNSIIREVIW----------
General information:
TITO was launched using:
RESULT:
Template:
1KK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -77698 for 869 contacts (-89.4/contact) +
2D Compatibility (PS) -15003 + (NN) -8559 + (LL) 2476
1D Compatibility (HY) -10800 + (ID) 3050
Total energy: -112634.0 ( -129.61 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_1KK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KK6-query.scw
PDB file :
Tito_Scwrl_1KK6.pdb
: