Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKEKMLAGQYYRPSAPELRKDREVALKNMQAFNNE--DNSSKRNVILQKWFGATGKSIHMEQRFVCDYGCNIYVGENFYANFNQTFLDVCEIRIGDNCMFGPNCQLLTPLHPLDPIERNSGLEYGAPIQIGNNVWLGGGVTILPGVVLGDNVVVGAGSVVTKSFENNVVIAGNPAKIIKKLA
1OCX Chain:A ((2-182))
-TEKEKMIAGELYRSADETLSRDRLRARQLIHRYNHSLAEEHTLRQQILADLFGQVTEA-YIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKKL-
General information:
TITO was launched using:
RESULT:
Template:
1OCX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128364 for 1418 contacts (-90.5/contact) +
2D Compatibility (PS) -19710 + (NN) -9189 + (LL) 556
1D Compatibility (HY) -19200 + (ID) 4700
Total energy: -180607.0 ( -127.37 by residue)
QMean score : 0.610
(partial model without unconserved sides chains):
PDB file :
Tito_1OCX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OCX-query.scw
PDB file :
Tito_Scwrl_1OCX.pdb
: