Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLLEERILKDGDVLGENILKVDSFLTHQVDFELMQEIGKVFADKYKEAGITKVVTIEASGIAPAVYAAQALGVPMIFAKKAKNITMTEGILTAEVYSFTKQV---TSQVSIVSRFLSNDDTVLIIDDFLANGQAAKGLLEIIGQAGAKVAGIGIVIEKSFQDGRDLLEKTGVPVTSLARIKAFENGRVVFAEADA
2DY0 Chain:A ((47-177))
----------------------------------------LLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKP-------GKLPRETISETYDLEYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFDLGGEQRLEKQGITSYSLVPFPGH------------
General information:
TITO was launched using:
RESULT:
Template:
2DY0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -112667 for 1050 contacts (-107.3/contact) +
2D Compatibility (PS) -14184 + (NN) -2039 + (LL) 5112
1D Compatibility (HY) -7600 + (ID) 2250
Total energy: -133628.0 ( -127.26 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_2DY0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DY0-query.scw
PDB file :
Tito_Scwrl_2DY0.pdb
: