Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIMDKSIPKATAKRLSLYYRIFKRFNTDGIEKASSKQIADALGIDSATVRRDFSYFGELGRRGFGYDVKKLMNFFAEILNDHSTTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPSTEAQEVADILVKAGIKGILSFSPVHLTLPKDIIVQYVDLTSELQTLLYFMNQQR
2VT3 Chain:A ((11-207))
---------ATAKRLPLYYRFLKNLHASGKQRVSSAELSDAVKVDSATIRRDFSYFGALG-----YNVDYLLSFFRKTLDQD---DVILIGVGNLGTAFLHY------NTKISMAFDINESKI--GTEVGGVPVYNLDDLEQHVKDESV--AILTVPAVAAQSITDRLVALGIKGILNFTPARLNVPEHIRIHHIDLAVELQSLVYFLKHYS
General information:
TITO was launched using:
RESULT:
Template:
2VT3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154512 for 1269 contacts (-121.8/contact) +
2D Compatibility (PS) -20137 + (NN) -11640 + (LL) 1168
1D Compatibility (HY) -22800 + (ID) 4450
Total energy: -212371.0 ( -167.35 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_2VT3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VT3-query.scw
PDB file :
Tito_Scwrl_2VT3.pdb
: