Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNQEKMEKAIYQFLEALGENPDREGLKDTPKRVA-------KMYIEMFSGLNQDPKEQFTAVFSENHEEVVIVKDIPFYSMCEHHLVPFYGKAHIAYLPNDGRVTGLSKLARAFEVASKRPQLQERLTAQVAQALEDALAPKGIFVMIEAEHMCMTMRGIKKPGSKTITTVARGLYKDDRYERQEILSLIQKG
1WPL Chain:A ((47-229))
--NLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDVLND------AIFDEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNK-QVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGVQKMNSKTVTSTMLGVFREDPKTREEFLTLIRS-
General information:
TITO was launched using:
RESULT:
Template:
1WPL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74952 for 1304 contacts (-57.5/contact) +
2D Compatibility (PS) -19582 + (NN) -7424 + (LL) 292
1D Compatibility (HY) -18000 + (ID) 4700
Total energy: -124366.0 ( -95.37 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_1WPL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1WPL-query.scw
PDB file :
Tito_Scwrl_1WPL.pdb
: