Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDELKKLAGVTAAKYVKNGMIVGLGTGSTAYFFVEEIGRRVKEEGLQ-VVGVTTSNRTTEQARGLGIPLKSADDIDVIDVTVDGADEVDPDFNGIKGGGGALLMEKIVATPTKEYIWVVDESKLVETLGAFKLPVEVVRYGSERLFRVFKSKGYCPSFRETEGDRF-ITDMGNYIIDLDLKKIEDPKQLANELDHTVGVVEHGLFNSMVNKVIVAGKNGLDILEK
1UJ5 Chain:A ((5-225))
LESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEELAKREGIPLVDLPP-EGVDLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADHTKKVPVLGRGPVPVEIVPFGYRATLKAIADLGGEPELR-MDGDEFYFTDGGHLIADCRFGPIGDPLGLHRALLEIPGVVETGLFVGMATRALVAGPFGVEELLP
General information:
TITO was launched using:
RESULT:
Template:
1UJ5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122376 for 1943 contacts (-63.0/contact) +
2D Compatibility (PS) -24127 + (NN) -10963 + (LL) 308
1D Compatibility (HY) -16000 + (ID) 4850
Total energy: -178008.0 ( -91.62 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_1UJ5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UJ5-query.scw
PDB file :
Tito_Scwrl_1UJ5.pdb
: