Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEEFLNTHNASILLSAANKSHYPQDDLPEVALAGRSNVGKSSFINTLLGRKNLARTSSKPGKTQLLNFYNIDDKLRFVDVPGYGYAKVSKTERAKWGKMIEEYLVTRDNLRVVVSLVDFRHDPSADDIQIYEFLKYYEIPVIIVATKADKIPRGKWNKHESSIKKKLNFDKKDHFIVFSSVDRTGLDESWDTILSEL
3PR1 Chain:A ((12-188))
----------------ARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFN--------------RSINFYLVNSKYYFVDLPGY-------KERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLL
General information:
TITO was launched using:
RESULT:
Template:
3PR1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -93678 for 1162 contacts (-80.6/contact) +
2D Compatibility (PS) -17331 + (NN) -8703 + (LL) 2172
1D Compatibility (HY) -14000 + (ID) 3050
Total energy: -134590.0 ( -115.83 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_3PR1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PR1-query.scw
PDB file :
Tito_Scwrl_3PR1.pdb
: