Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKPIVRDTFFLQQKSQMASRADVSLAKDLQDTLHANQNY-CVGMAANMIGSLKRVIIINVGITN--LVMFNP-VLVAKSDPYETEESCLSLVGCR-STQRYRHITISYRDINWKEQQIKLTDFPAQICQHELDHLEGILI
4DR9 Chain:A ((28-160))
----------VLRQPAKRVSRIDDELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDLEL--PPLVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLF
General information:
TITO was launched using:
RESULT:
Template:
4DR9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71047 for 886 contacts (-80.2/contact) +
2D Compatibility (PS) -12686 + (NN) 2150 + (LL) 912
1D Compatibility (HY) -8000 + (ID) 1950
Total energy: -90621.0 ( -102.28 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_4DR9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR9-query.scw
PDB file :
Tito_Scwrl_4DR9.pdb
: