Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MYTFYEYPKCTTCRSAKKELTELGLTFEAIDIKSNPPKASLLKELLENSPY-DLKKFFNTSGNSYRELGLKDKFDDLTLDQALDLLASDGMLIKRPLLVKDNKILQIGYRTKYKDLNLV
3RDW Chain:A ((8-106))
--TIYHNPRCSKSRETLALVEQQGITPQVVLYLETPPSVDKLKELLQQLGFSDARQLMRTKEDLYKTLNLDDR--GLTQDQLLQAMADNPKLIERPIVVTQGKARIGRPPEQVLEIL--
General information:
TITO was launched using:
RESULT:
Template:
3RDW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39209 for 670 contacts (-58.5/contact) +
2D Compatibility (PS) -10556 + (NN) -2503 + (LL) 736
1D Compatibility (HY) -6000 + (ID) 1600
Total energy: -59132.0 ( -88.26 by residue)
QMean score : 0.804
(partial model without unconserved sides chains):
PDB file :
Tito_3RDW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3RDW-query.scw
PDB file :
Tito_Scwrl_3RDW.pdb
: