Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSRPIGFLDSGVGGLTVVKEMFRQLPEEEVIFIGDQARAPYGPRPAQQIREFTWQMVNFLLTKNVKMIVIACNTATAVAWQEIKEKLDIPVLGVILPGASAAIKSTNSGKVGIIGTPMTVKSDAYRQKIQALSPNTAVVSLACPKFVPIVESNQMSSSLAKKVVYETLSPL-VGKLDTLILGCTHYPLLRPIIQNVMGAEVKLIDSGAETVRDISVLLNYFEINHNWQNKHGGHHFYTTASPKGFKEIAEQWLS-QEINVERIVL
2JFV Chain:A ((24-288))
-DNRPIGFIDSGVGGLTVVKEALKQLPNENILFVGDTARCPYGPRPAEQVIQYTWEMTDYLVEQGIKMLVIACNTATAVALEEIKAALSIPVIGVILPGTRAAVKKTQNKQVGIIGTIGTVKSQAYEKALKEKVPELTVTSLACPKFVSVVESNEYHSSVAKKIVAETLAPLTTKKIDTLILGCTHYPLLRPIIQNVMGENVQLIDSGAETVGEVSMLLDYFNLSNSPQNGRTLCQFYTTGSAKLFEEIAEDWLGIGHLNVEHIEL
General information:
TITO was launched using:
RESULT:
Template:
2JFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -237710 for 2341 contacts (-101.5/contact) +
2D Compatibility (PS) -28230 + (NN) -8064 + (LL) 208
1D Compatibility (HY) -32400 + (ID) 8200
Total energy: -314396.0 ( -134.30 by residue)
QMean score : 0.548
(partial model without unconserved sides chains):
PDB file :
Tito_2JFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JFV-query.scw
PDB file :
Tito_Scwrl_2JFV.pdb
: