Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTTKVFSVLSLSVAAFMMTACQSNHSTKKADMSPDKVEQKTKFKNISLSSNKLLAKENTMSVLWYQNSAEAKALYLQGYNVAKMKLDDWLQKPSEKPYSIILDLDETVLDNSPYQAKNIKDGSSFTPESWDKWVQKKSAKAVAGAKAFLKYANEKGIKIYYVSDRTDA-QVDATKENLEKEGIPVQGKDHLLFLKKGMKSKESRRQAVQKDTNLIMLF-GDNLVDFADFSKSS-STDREQLLTKLQSEFGSKFIVFPNPMYGSWESAIYQGKH-LDVQKQLKERQKMLHSYD |
3OCZ Chain:A ((12-252)) | --------------------------------------------------ANMQLQQQAVLGLNWMQDSGEYKALAYQAYNAAKVAFDH-AKVAKGKKKAVVADLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFNGV-EESAFYLKKDKSAKAARFAEIEKQGYEIVLYVGDNLDDFGNTVYGKLNADRRAFVDQNQGKFGKTFIMLPNANYGGWEGGLAEGYFKKDTQGQIKARLDAVQAWD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3OCZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10426 for 1785 contacts (-5.8/contact) +
2D Compatibility (PS) -25711 + (NN) -12786 + (LL) 3828
1D Compatibility (HY) -12400 + (ID) 3950
Total energy: -61445.0 ( -34.42 by residue)
QMean score : 0.418
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