Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIFDTHTHLNVENFEGKIDEEINLASELGVTKMNVVGFDQDTISKSLELSSQYAQVYSTIGWHPTEAGSYDDNIESMIISHLENPKVIALGEIGLDYYWMEDPKDIQIEVFKRQIELSKEYNLPFVVHTRDALEDTYEVIKESGVGPFGGIMHSFSGSLEMAQKFIDLGMMISFSG-VVTFKKALDVQEAARELPLDKILVETDAPYLAP---VPK-RGRENKTAYTRYVVEKIAELRGITVEEVAEATYQNAVRIFRLDEKN
1XWY Chain:A ((5-260))
---MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF--
General information:
TITO was launched using:
RESULT:
Template:
1XWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -123763 for 2171 contacts (-57.0/contact) +
2D Compatibility (PS) -27295 + (NN) -10415 + (LL) 752
1D Compatibility (HY) -11200 + (ID) 3700
Total energy: -175621.0 ( -80.89 by residue)
QMean score : 0.618
(partial model without unconserved sides chains):
PDB file :
Tito_1XWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XWY-query.scw
PDB file :
Tito_Scwrl_1XWY.pdb
: