Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKVLTACGNGMGSSMVIKMKVENALRQLGVSNFESASCSVGEAKGLAANYDIVVASNHLIHELDGRTKGHLVGLDNLMDDNEIKTKLQEIL
1TVM Chain:A ((22-105))
-RKIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRVNEIETYMDGVHLICTTARVDRSFGD---IPLVHGMPFVSGVGIEALQNKIL
General information:
TITO was launched using:
RESULT:
Template:
1TVM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -49111 for 528 contacts (-93.0/contact) +
2D Compatibility (PS) -9083 + (NN) -2664 + (LL) 344
1D Compatibility (HY) -6000 + (ID) 600
Total energy: -67114.0 ( -127.11 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_1TVM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TVM-query.scw
PDB file :
Tito_Scwrl_1TVM.pdb
: