Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKIIIVAHGNFPDGILSSLELIAGHQEYVVGINFIAGMSSNDV--RVALQREVIDF-KEILVLTDLLGGTPFNVSSALSVEYTDKKIKVLSGLNLSMLMEAVLSRTMFEHVDDLVDKVITSSHEGIVDFSTCLATQTAEATFEGGI
1VRC Chain:A ((3-126))
-IAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAETLIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVD--KEHYEVIAGVNIPMLVETLMARDDDPSFDELVALAVETGREGVKALK----------------
General information:
TITO was launched using:
RESULT:
Template:
1VRC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95689 for 927 contacts (-103.2/contact) +
2D Compatibility (PS) -13051 + (NN) -2496 + (LL) 1800
1D Compatibility (HY) -9600 + (ID) 1950
Total energy: -120986.0 ( -130.51 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_1VRC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VRC-query.scw
PDB file :
Tito_Scwrl_1VRC.pdb
: