Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKSKILLQLMQGKIVAVIRGNSQEEAFQAAQACIKGGISAIEIAYTNSKASQVIEQLVTQYTNQEQVVVGAGTVLDSETARMAILAGAKFIVSPAFNLQTAKLCNRYAIPYLPGCMTLSEVTTALEAGCEIIKIFPGGTLGTSFISSLKAPLP-QVQIMVTGGVNLTNAKDWFLSGVTAIGIGGEFNKLAALGEFDKITEMAKQYKIQLNLN
2V82 Chain:A ((9-181))
--------------LIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDK--ALIGAGTVLKPEQVDALARMGCQLIVTPNIHSEVIRRAVGYGMTVCPGCATATEAFTALEAGAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVKAYREAVQ
General information:
TITO was launched using:
RESULT:
Template:
2V82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -161754 for 1487 contacts (-108.8/contact) +
2D Compatibility (PS) -19127 + (NN) -13482 + (LL) 1808
1D Compatibility (HY) -11600 + (ID) 2850
Total energy: -207005.0 ( -139.21 by residue)
QMean score : 0.637
(partial model without unconserved sides chains):
PDB file :
Tito_2V82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V82-query.scw
PDB file :
Tito_Scwrl_2V82.pdb
: