Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTDNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCTATEDYKDVAAV-ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYVATGHYAQVTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLPAQPGRMMTVDGRDMGEHAGLMYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEIHFTRDMPNEFKLECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFYNEQECLGGGMIDQAYRDDKICQYI |
3VRH Chain:A ((49-155)) | -------RILVAVSGGKDSAVTAYVLKKLGYNIECLHI-------NLGISGYSEKSEEYAKKQCKLIGAPLHIVRIKE-----ILGYGIGEVKTRRPPCSYCGLTKRYIMNKF---AYDNGFDAIATGHNLDDEASFLLNNILHWNTEYLAKGGPILPQQGKFIKKVKPLYEVTEREVVAYALAVGLEYIVEECPYTTLDMKGVLNELEEKRPGTKFNFVRGYLKKKKLFEPKECKICRMPSSGDICAFCKFWGLKKEINFKVSSTDEEPFG------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VRH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -65608 for 753 contacts (-87.1/contact) +
2D Compatibility (PS) -11360 + (NN) -211 + (LL) 7080
1D Compatibility (HY) -7600 + (ID) 1700
Total energy: -79399.0 ( -105.44 by residue)
QMean score : 0.477
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