Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGLFITFEGPEGAGKTTVLQEIKNILTAEGLQVMATREPGGIDIAEQIREVILNENNILMDPKTEALLYAAARRQHLVEKVKPALEQGFIVLCDRFIDSSLAYQGYARGLGIDEVLSINEFAIGDMMPHVTVYFSIDPEEGLKRIYANGSREKNRLDLEKLDFHTKVQEGYQELMKRFPERFHSVDAGQSKDLVVQDVLKVIDEALKKIQL
2CCJ Chain:A ((4-205))
----FITFEGPEGSGKTTVINEVYHRLVKD-YDVIMTREPGGVPTGEEIRKIVLEGND--MDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKN-S---NRLDQEDLKFHEKVIEGYQEIIH----RFKSVNADQPLENVVEDTYQTIIKYLEKI--
General information:
TITO was launched using:
RESULT:
Template:
2CCJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -144722 for 1763 contacts (-82.1/contact) +
2D Compatibility (PS) -21831 + (NN) -12979 + (LL) 980
1D Compatibility (HY) -20400 + (ID) 5450
Total energy: -204402.0 ( -115.94 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_2CCJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CCJ-query.scw
PDB file :
Tito_Scwrl_2CCJ.pdb
: