Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEGAEQIISEIQNQLQNLK
2RO4 Chain:A ((1-53))
--MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMT-----------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RO4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15268 for 241 contacts (-63.4/contact) +
2D Compatibility (PS) -5825 + (NN) -1814 + (LL) 3088
1D Compatibility (HY) -8400 + (ID) 2650
Total energy: -30869.0 ( -128.09 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_2RO4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RO4-query.scw
PDB file :
Tito_Scwrl_2RO4.pdb
: