Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLFDTHAHLNAEQYDTDLEEVIERAKAEKVERIVVVGFDRPTITRAMEMIEEYDFIYAAIGWHPVDAIDMTEEDLAWIKELSAHEKVVAIGEMGLDYHWDKSPKDIQKEVFRNQIALAKEVNLPIIIHNRDATEDVVTILKEEGAEAVGGIMHCFTGSAEVARECMKMNFYLSFGGPVTF-KNAKKPKEVVKEIPNDRLLIETDCPF-----LTPHPFRGKRNEPSYVKYVAEQIAELKEMTFEEIASITTENAKRLFRIN
1XWY Chain:A ((5-262))
-MFDIGVNLTSSQFAKDRDDVVACAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQERAFVAQLRIAADLNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVAHGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKP-SSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGI-
General information:
TITO was launched using:
RESULT:
Template:
1XWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -155990 for 2180 contacts (-71.6/contact) +
2D Compatibility (PS) -27434 + (NN) -14010 + (LL) 260
1D Compatibility (HY) -15200 + (ID) 4000
Total energy: -216374.0 ( -99.25 by residue)
QMean score : 0.644
(partial model without unconserved sides chains):
PDB file :
Tito_1XWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XWY-query.scw
PDB file :
Tito_Scwrl_1XWY.pdb
: