Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVIAGLGNPGKNYENTRHNVGFMVIDQLAKEWNIELNQNKFNGLYGTGFVSGKKVLLVKPLTYMNLSGECLRPLMDYYDVDNEDLTVIYDDLDLPTGKIRLRTKGSAGGHNGIKSLIQHL-GTSEFDRIRIGIGRPVNGMKVVDYVLGSFTKEEAPEIEEAVDKSVKACEASLSKPFLEVMNEFNAKV
1RYB Chain:A ((5-188))
--LIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKG-----ERFN---
General information:
TITO was launched using:
RESULT:
Template:
1RYB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117269 for 1476 contacts (-79.5/contact) +
2D Compatibility (PS) -18880 + (NN) -5567 + (LL) 1596
1D Compatibility (HY) -16400 + (ID) 3950
Total energy: -160470.0 ( -108.72 by residue)
QMean score : 0.604
(partial model without unconserved sides chains):
PDB file :
Tito_1RYB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RYB-query.scw
PDB file :
Tito_Scwrl_1RYB.pdb
: